ROB KNIGHT : rechercher sur Z-Library

Le plus grand référentiel d'articles scientifiques au monde. 70,000,000+ d'articles gratuitement.

Don't use scam websites

Livres
Articles (470)
Les plus populaires
Liste
- Liste
- Tableau

1

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks

Rule, Adam, Birmingham, Amanda, Zuniga, Cristal, Altintas, Ilkay, Huang, Shih-Cheng, Knight, Rob, Moshiri, Niema, Nguyen, Mai H., Rosenthal, Sara Brin, Pérez, Fernando, Rose, Peter W., Lewitter, Fran

Journal:

PLoS Computational Biology

Année:

2019

Langue:

english

Fichier:

PDF, 420 KB

english, 2019

2

Current understanding of the human microbiome

Gilbert, Jack A, Blaser, Martin J, Caporaso, J Gregory, Jansson, Janet K, Lynch, Susan V, Knight, Rob

Journal:

Nature Medicine

Année:

2018

Langue:

english

Fichier:

PDF, 655 KB

english, 2018

3

Best practices for analysing microbiomes

Knight, Rob, Vrbanac, Alison, Taylor, Bryn C., Aksenov, Alexander, Callewaert, Chris, Debelius, Justine, Gonzalez, Antonio, Kosciolek, Tomasz, McCall, Laura-Isobel, McDonald, Daniel, Melnik, Alexey V.

Journal:

Nature Reviews Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2018

4

Links between environment, diet, and the hunter-gatherer microbiome

Fragiadakis, Gabriela K., Smits, Samuel A., Sonnenburg, Erica D., Van Treuren, William, Reid, Gregor, Knight, Rob, Manjurano, Alphaxard, Changalucha, John, Dominguez-Bello, Maria Gloria, Leach, Jeff,

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2018

5

Diversity, stability and resilience of the human gut microbiota

Lozupone, Catherine A., Stombaugh, Jesse I., Gordon, Jeffrey I., Jansson, Janet K., Knight, Rob

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2012

6

Human Genetics Shape the Gut Microbiome

Goodrich, Julia K., Waters, Jillian L., Poole, Angela C., Sutter, Jessica L., Koren, Omry, Blekhman, Ran, Beaumont, Michelle, Van Treuren, William, Knight, Rob, Bell, Jordana T., Spector, Timothy D.,

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.92 MB

english, 2014

7

ORIGINS OF THE GENETIC CODE: The Escaped Triplet Theory

Yarus, Michael, Caporaso, J. Gregory, Knight, Rob

Journal:

Annual Review of Biochemistry

Année:

2005

Langue:

english

Fichier:

PDF, 263 KB

english, 2005

8

Life Through A Microbial Lens

Susan Spath, Maureen O’Malley, Jesse Zaneveld, Rob Knight, Carl Zimmer

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 198 KB

english, 2009

9

Soil bacterial and fungal communities across a pH gradient in an arable soil

Rousk, Johannes, Bååth, Erland, Brookes, Philip C, Lauber, Christian L, Lozupone, Catherine, Caporaso, J Gregory, Knight, Rob, Fierer, Noah

Journal:

The ISME Journal

Année:

2010

Langue:

english

Fichier:

PDF, 1016 KB

english, 2010

10

Tweeting the terror: modelling the social media reaction to the Woolwich terrorist attack

Burnap, Pete, Williams, Matthew L., Sloan, Luke, Rana, Omer, Housley, William, Edwards, Adam, Knight, Vincent, Procter, Rob, Voss, Alex

Journal:

Social Network Analysis and Mining

Année:

2014

Langue:

english

Fichier:

PDF, 588 KB

english, 2014

11

The Human Microbiome Project

Turnbaugh, Peter J., Ley, Ruth E., Hamady, Micah, Fraser-Liggett, Claire M., Knight, Rob, Gordon, Jeffrey I.

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 362 KB

english, 2007

12

The Intestinal Metabolome: An Intersection Between Microbiota and Host

Ursell, Luke K., Haiser, Henry J., Van Treuren, Will, Garg, Neha, Reddivari, Lavanya, Vanamala, Jairam, Dorrestein, Pieter C., Turnbaugh, Peter J., Knight, Rob

Journal:

Gastroenterology

Année:

2014

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2014

13

Methods for phylogenetic analysis of microbiome data

Washburne, Alex D., Morton, James T., Sanders, Jon, McDonald, Daniel, Zhu, Qiyun, Oliverio, Angela M., Knight, Rob

Journal:

Nature Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2018

14

Worlds within worlds: evolution of the vertebrate gut microbiota

Ley, Ruth E., Lozupone, Catherine A., Hamady, Micah, Knight, Rob, Gordon, Jeffrey I.

Journal:

Nature Reviews Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 928 KB

english, 2008

15

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

Kathryn G. Eilers, Christian L. Lauber, Rob Knight, Noah Fierer

Journal:

Soil Biology and Biochemistry

Année:

2010

Langue:

english

Fichier:

PDF, 634 KB

english, 2010

16

How biologists conceptualize genes: an empirical study

Karola Stotz, Paul E. Griffiths, Rob Knight

Journal:

Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences

Année:

2004

Langue:

english

Fichier:

PDF, 318 KB

english, 2004

17

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

Bokulich, Nicholas A, Subramanian, Sathish, Faith, Jeremiah J, Gevers, Dirk, Gordon, Jeffrey I, Knight, Rob, Mills, David A, Caporaso, J Gregory

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 413 KB

english, 2012

18

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

Koren, Omry, Goodrich, Julia K., Cullender, Tyler C., Spor, Aymé, Laitinen, Kirsi, Kling Bäckhed, Helene, Gonzalez, Antonio, Werner, Jeffrey J., Angenent, Largus T., Knight, Rob, Bäckhed, Fredrik, Iso

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2012

19

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

Koren, Omry, Knights, Dan, Gonzalez, Antonio, Waldron, Levi, Segata, Nicola, Knight, Rob, Huttenhower, Curtis, Ley, Ruth E., Eisen, Jonathan A.

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 3.66 MB

english, 2013

20

Multilevel Research Strategies and Biological Systems

O’Malley, Maureen A., Brigandt, Ingo, Love, Alan C., Crawford, John W., Gilbert, Jack A., Knight, Rob, Mitchell, Sandra D., Rohwer, Forest

Journal:

Philosophy of Science

Année:

2014

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2014

21

Origin of microbial biomineralization and magnetotaxis during the Archean

Lin, Wei, Paterson, Greig A., Zhu, Qiyun, Wang, Yinzhao, Kopylova, Evguenia, Li, Ying, Knight, Rob, Bazylinski, Dennis A., Zhu, Rixiang, Kirschvink, Joseph L., Pan, Yongxin

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 7.46 MB

english, 2017

22

The Microbiome and Human Biology

Knight, Rob, Callewaert, Chris, Marotz, Clarisse, Hyde, Embriette R., Debelius, Justine W., McDonald, Daniel, Sogin, Mitchell L.

Journal:

Annual Review of Genomics and Human Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 635 KB

english, 2017

23

48: Oral probiotic versus placebo and the maternal microbiome during pregnancy: A randomized controlled trial

Conturie, Charlotte L., Thorson, Charlotte, Su, Catherine, Perry, Kelsey, Humphrey, Gregory, Hansen, Shalisa, Knight, Rob, Song, Se Jin, Swafford, Austin, Laurent, Louise C.

Journal:

American Journal of Obstetrics and Gynecology

Année:

2020

Langue:

english

Fichier:

PDF, 885 KB

english, 2020

24

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

Haiyan Chu, Noah Fierer, Christian L. Lauber, J. G. Caporaso, Rob Knight, Paul Grogan

Journal:

Environmental Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 647 KB

english, 2010

25

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

Christian L. Lauber, Nicholas Zhou, Jeffrey I. Gordon, Rob Knight, Noah Fierer

Journal:

FEMS Microbiology Letters

Année:

2010

Langue:

english

Fichier:

PDF, 181 KB

english, 2010

26

Changes through time: integrating microorganisms into the study of succession

Noah Fierer, Diana Nemergut, Rob Knight, Joseph M. Craine

Journal:

Research in Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 219 KB

english, 2010

27

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

Amanda J. Redford, Robert M. Bowers, Rob Knight, Yan Linhart, Noah Fierer

Journal:

Environmental Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 368 KB

english, 2010

28

Translating the human microbiome

Brown, James, de Vos, Willem M, DiStefano, Peter S, Doré, Joël, Huttenhower, Curtis, Knight, Rob, Lawley, Trevor D, Raes, Jeroen, Turnbaugh, Peter

Journal:

Nature Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 434 KB

english, 2013

29

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

Fierer, Noah, Lauber, Christian L, Ramirez, Kelly S, Zaneveld, Jesse, Bradford, Mark A, Knight, Rob

Journal:

The ISME Journal

Année:

2012

Langue:

english

Fichier:

PDF, 934 KB

english, 2012

30

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Langille, Morgan G I, Zaneveld, Jesse, Caporaso, J Gregory, McDonald, Daniel, Knights, Dan, Reyes, Joshua A, Clemente, Jose C, Burkepile, Deron E, Vega Thurber, Rebecca L, Knight, Rob, Beiko, Robert G

Journal:

Nature Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2013

31

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

Ramirez, Kelly S., Lauber, Christian L., Knight, Rob, Bradford, Mark A., Fierer, Noah

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 455 KB

english, 2010

32

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Yilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James R, Amaral-Zettler, Linda, Gilbert, Jack A, Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Ch

Journal:

Nature Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 489 KB

english, 2011

33

Bacterial phylogeny structures soil resistomes across habitats

Forsberg, Kevin J., Patel, Sanket, Gibson, Molly K., Lauber, Christian L., Knight, Rob, Fierer, Noah, Dantas, Gautam

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 3.33 MB

english, 2014

34

Conducting a Microbiome Study

Goodrich, Julia K., Di Rienzi, Sara C., Poole, Angela C., Koren, Omry, Walters, William A., Caporaso, J. Gregory, Knight, Rob, Ley, Ruth E.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2014

35

Genetic Determinants of the Gut Microbiome in UK Twins

Goodrich, Julia K., Davenport, Emily R., Beaumont, Michelle, Jackson, Matthew A., Knight, Rob, Ober, Carole, Spector, Tim D., Bell, Jordana T., Clark, Andrew G., Ley, Ruth E.

Journal:

Cell Host & Microbe

Année:

2016

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2016

36

Heritable components of the human fecal microbiome are associated with visceral fat

Beaumont, Michelle, Goodrich, Julia K., Jackson, Matthew A., Yet, Idil, Davenport, Emily R., Vieira-Silva, Sara, Debelius, Justine, Pallister, Tess, Mangino, Massimo, Raes, Jeroen, Knight, Rob, Clark,

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 4.86 MB

english, 2016

37

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome

Neilson, Julia W., Califf, Katy, Cardona, Cesar, Copeland, Audrey, van Treuren, Will, Josephson, Karen L., Knight, Rob, Gilbert, Jack A., Quade, Jay, Caporaso, J. Gregory, Maier, Raina M., Chu, Haiyan

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2017

38

Impacts of the Human Gut Microbiome on Therapeutics

Vázquez-Baeza, Yoshiki, Callewaert, Chris, Debelius, Justine, Hyde, Embriette, Marotz, Clarisse, Morton, James T., Swafford, Austin, Vrbanac, Alison, Dorrestein, Pieter C., Knight, Rob

Journal:

Annual Review of Pharmacology

Année:

2018

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2018

39

The gut–liver axis and the intersection with the microbiome

Tripathi, Anupriya, Debelius, Justine, Brenner, David A., Karin, Michael, Loomba, Rohit, Schnabl, Bernd, Knight, Rob

Journal:

Nature Reviews Gastroenterology and Hepatology (formerly Nature Clinical Practice Gastroenterology and Hepatology)

Année:

2018

Langue:

english

Fichier:

PDF, 2.35 MB

english, 2018

40

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations

Eisenhofer, Raphael, Minich, Jeremiah J., Marotz, Clarisse, Cooper, Alan, Knight, Rob, Weyrich, Laura S.

Journal:

Trends in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2018

41

The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology

Ruth E. Ley, Rob Knight, Jeffrey I. Gordon

Journal:

Environmental Microbiology

Année:

2007

Langue:

english

Fichier:

PDF, 89 KB

english, 2007

42

Species divergence and the measurement of microbial diversity

Catherine A. Lozupone, Rob Knight

Journal:

FEMS Microbiology Reviews

Année:

2008

Langue:

english

Fichier:

PDF, 838 KB

english, 2008

43

UniFrac: an effective distance metric for microbial community comparison

Lozupone, Catherine, Lladser, Manuel E, Knights, Dan, Stombaugh, Jesse, Knight, Rob

Journal:

The ISME Journal

Année:

2010

Langue:

english

Fichier:

PDF, 299 KB

english, 2010

44

Experimental and analytical tools for studying the human microbiome

Kuczynski, Justin, Lauber, Christian L., Walters, William A., Parfrey, Laura Wegener, Clemente, José C., Gevers, Dirk, Knight, Rob

Journal:

Nature Reviews Genetics

Année:

2011

Langue:

english

Fichier:

PDF, 743 KB

english, 2011

45

Microbiota restoration: natural and supplemented recovery of human microbial communities

Reid, Gregor, Younes, Jessica A., Van der Mei, Henny C., Gloor, Gregory B., Knight, Rob, Busscher, Henk J.

Journal:

Nature Reviews Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 545 KB

english, 2010

46

Unlocking the potential of metagenomics through replicated experimental design

Knight, Rob, Jansson, Janet, Field, Dawn, Fierer, Noah, Desai, Narayan, Fuhrman, Jed A, Hugenholtz, Phil, van der Lelie, Daniel, Meyer, Folker, Stevens, Rick, Bailey, Mark J, Gordon, Jeffrey I, Kowalc

Journal:

Nature Biotechnology

Année:

2012

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2012

47

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

Gaddy T. Bergmann, Scott T. Bates, Kathryn G. Eilers, Christian L. Lauber, J. Gregory Caporaso, William A. Walters, Rob Knight, Noah Fierer

Journal:

Soil Biology and Biochemistry

Année:

2011

Langue:

english

Fichier:

PDF, 416 KB

english, 2011

48

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

KAREN E. SULLAM, STEVEN D. ESSINGER, CATHERINE A. LOZUPONE, MICHAEL P. O’CONNOR, GAIL L. ROSEN, ROB KNIGHT, SUSAN S. KILHAM, JACOB A. RUSSELL

Journal:

Molecular Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 2.62 MB

english, 2012

49

The Impact of the Gut Microbiota on Human Health: An Integrative View

Jose C. Clemente, Luke K. Ursell, Laura Wegener Parfrey, Rob Knight

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 635 KB

english, 2012

50

High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity

Marie A. Hildebrandt, Christian Hoffmann, Scott A. Sherrill–Mix, Sue A. Keilbaugh, Micah Hamady, Ying–Yu Chen, Rob Knight, Rexford S. Ahima, Frederic Bushman, Gary D. Wu

Journal:

Gastroenterology

Année:

2009

Langue:

english

Fichier:

PDF, 1007 KB

english, 2009